MaesePedro

MaesePedro v0.03 is a program made in the Jesus Vazquez Cardiovascular Proteomics Lab at Centro Nacional de Investigaciones Cardiovasculares, used to generate pseudoinverted FASTA files.

Sanson needs one input file:

• a FASTA file (using the -f command)

And delivers two output files:

• the inverted FASTA file
• a log file (default suffix: "_logFile")

Usage:

maesepedro.py -f[FASTAFile]

Arguments:

  -h, --help          Display this help and exit.
  -a, --analysis=string
                      Use a prefix for the output files.
  -p, --place, --folder=foldername
                      To use a different common folder for the output files.
                      If this is not provided, the the folder used will be the
                      same as the FASTA file folder.
  -c, --cleavesites=string
                      The residues after which the protease is cleaving.
                      Default is trypsin (KR). Note that only C-terminal
                      cleaving proteases are being considered in this version.
  -f, --fastafile=string
                      The input FASTA file to invert.
  -r, --removepalindromes
                      Remove peptides unchanged upon pseudoinversion, i.e.,
                      peptides such as ASSAK, EGTGER (when using trypsin).
                      Palindromic peptides are not removed by default.